Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015185: Desulfurobacterium thermolithotrophum DSM 11699 chromosome,

NCBI: NC_015185

Host Lineage: Desulfurobacterium thermolithotrophum; Desulfurobacterium; Desulfurobacteriaceae; Desulfurobacteriales; Aquificae; Bacteria

General Information: Environment: Marine; Isolation: Deep-sea hydrothermal vent chimney; Temp: Thermophile; Temp: 70C; Country: Atlantic Ocean: Mid-Atlantic Ridge. This thermophilic, anaerobic, strictly autotrophic, sulfur-reducing bacteriumwas isolated from a deep-sea hydrothermal chimney sample collected at the mid-Atlantic ridge.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1140588*16008019493Island text1.5758117.980930.1742Neighbours21BLASTN140588.gbk
2174847*19343818592Island text1.7676818.780430.9965Neighbours21BLASTN+174847.gbk
3485866*51359027725Island text3.0741736.76935.5084Neighbours21BLASTN+485866.gbk
459259861297020373Island text3.3536418.058925.8893Neighbours21BLASTN+IslandViewer 592598.gbk
5792933*81385820926Island text1.6002920.326722.5484Neighbours21BLASTN+792933.gbk
6875324*89853323210Island text1.4900818.549428.6758Neighbours21BLASTN+875324.gbk
71114180*113825624077Island text1.7211625.533531.705Neighbours21BLASTN+1114180.gbk
81296917131682319907Island text1.6429117.828927.9571Neighbours21BLASTN+1296917.gbk
91352171137893326763Island text1.9034919.27833.7064Neighbours21BLASTN+1352171.gbk
101414453*144663332181Island text2.8547934.033936.3561Neighbours21BLASTN+1414453.gbk