Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015172: Syntrophobotulus glycolicus DSM 8271 chromosome, complete genome

NCBI: NC_015172

Host Lineage: Syntrophobotulus glycolicus; Syntrophobotulus; Peptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Country: Germany; Environment: Fresh water, Sludge, Marine; Isolation: isolated from syntrophic coculture FlGlyM; Temp: Mesophile; Temp: 28C. This strict anaerobe is a syntrophically glycolate-oxidizing bacterium.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
150782*7109320312Island text1.5253935.043837.1528Neighbours31BLASTN+IslandViewer 50782.gbk
2237397*25630718911Island text2.4775132.420454.6595Neighbours21BLASTN+237397.gbk
3515557*54500129445Island text1.707341.904852.3465NeighboursBLASTN+IslandViewer 515557.gbk
4775128*81508539958Island text2.6205433.535925.7618Neighbours21BLASTN+775128.gbk
5850802*87812927328Island text1.8043541.643729.9668Neighbours31BLASTN+IslandViewer 850802.gbk
695155097409922550Island text1.6814133.284231.8913Neighbours33BLASTN+IslandViewer 951550.gbk
71002872102698524114Island text1.5461639.877235.321Neighbours23BLASTN+1002872.gbk
81075592*111253336942Island text2.0064838.098933.6302Neighbours31BLASTN+IslandViewer 1075592.gbk
91120000*114225322254Island text1.7083832.350431.6238Neighbours33IslandViewer 1120000.gbk
101161000118941128412Island text1.9166334.76536.1835Neighbours315BLASTN+1161000.gbk
111195782123910043319Island text1.7426435.589834.2636Neighbours31BLASTN+IslandViewer 1195782.gbk
121255956*127803022075Island text1.9142634.768228.7931Neighbours32BLASTNIslandViewer 1255956.gbk
131334958*136859933642Island text2.3461439.473227.3379Neighbours31BLASTN+IslandViewer 1334958.gbk
141429266*144959920334Island text1.6403634.759532.8801Neighbours32BLASTN+IslandViewer 1429266.gbk
151471501150819636696Island text1.65334.661733.9719Neighbours31BLASTN+IslandViewer 1471501.gbk
161621223164496223740Island text4.0815332.77319.0827Neighbours21BLASTN+1621223.gbk
172628128*267843650309Island text1.77143.458742.3753NeighboursBLASTN+IslandViewer 2628128.gbk
182986867*303655149685Island text1.7690244.553342.7163NeighboursBLASTN+IslandViewer 2986867.gbk
193095781311509919319Island text1.5551135.451138.2223Neighbours31BLASTN+3095781.gbk
203160249*320784747599Island text1.7625843.98542.8149NeighboursBLASTN+IslandViewer 3160249.gbk