Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015170: Deinococcus proteolyticus MRP plasmid pDEIPR03, complete sequence

NCBI: NC_015170

Host Lineage: Deinococcus proteolyticus; Deinococcus; Deinococcaceae; Deinococcales; Deinococcus-Thermus; Bacteria

General Information: Environment: Soil; Isolation: Faeces of Lama glama; Temp: Mesophile. These are gram-positive bacteria that form pink to red colored colonies. Many of the strains are resistant to radiation. Cells are spherical, nonmotile.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1540007700623007Island text1.7102219.671615.9265Neighbours11BLASTN+54000.gbk