Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015167: Cellulophaga lytica DSM 7489 chromosome, complete genome

NCBI: NC_015167

Host Lineage: Cellulophaga lytica; Cellulophaga; Flavobacteriaceae; Flavobacteriales; Bacteroidetes; Bacteria

General Information: Country: Costa Rica; Environment: Mud; Isolation: Beach mud; Limon, Costa Rica; Temp: Mesophile. Cellulophaga lytica is a member of a Cytophaga-Flavobacterium-Bacteroides(CFB) group of gliding, yellow/orange-pigmented bacteria that were isolated from the surface of the marine benthicmacroalga Fucus serratus.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1313506*33659923094Island text2.9495921.792631.1079Neighbours21BLASTN313506.gbk
2569569*59872729159Island text1.6812620.902230.9401Neighbours21BLASTN569569.gbk
3724934*74809123158Island text3.0691120.773934.6868Neighbours21BLASTN724934.gbk
4864525*88313618612Island text1.7007317.75732.4857Neighbours21BLASTN+864525.gbk
51055145107783122687Island text1.884616.833121.37Neighbours21BLASTNIslandViewer 1055145.gbk
61154497*118273428238Island text3.0453921.858436.9259Neighbours21BLASTN1154497.gbk
71666000169461128612Island text1.8499323.64117.7417Neighbours21BLASTN+IslandViewer 1666000.gbk
81701118172088419767Island text1.6486517.874511.2255Neighbours21BLASTN1701118.gbk
91911758*193835726600Island text2.4833719.076219.372Neighbours21BLASTN1911758.gbk
102068607*209715528549Island text1.7296220.07834.223Neighbours21BLASTN2068607.gbk
112415604*244614330540Island text1.9450819.896330.2044Neighbours21BLASTN2415604.gbk
122498666252256623901Island text2.1469619.355823.9213Neighbours21BLASTN2498666.gbk
132663686268503921354Island text1.5052918.880125.0743Neighbours21IslandViewer 2663686.gbk
142700218*272322723010Island text2.555721.231132.4759Neighbours21BLASTN2700218.gbk
153469968*349361123644Island text1.563819.345829.2545Neighbours21BLASTN3469968.gbk
163652015*367216120147Island text1.5090820.084528.1018Neighbours21BLASTN+IslandViewer 3652015.gbk