Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015161: Deinococcus proteolyticus MRP chromosome, complete genome

NCBI: NC_015161

Host Lineage: Deinococcus proteolyticus; Deinococcus; Deinococcaceae; Deinococcales; Deinococcus-Thermus; Bacteria

General Information: Environment: Soil; Isolation: Faeces of Lama glama; Temp: Mesophile. These are gram-positive bacteria that form pink to red colored colonies. Many of the strains are resistant to radiation. Cells are spherical, nonmotile.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
136668*6109924432Island text2.5168225.008122.2387Neighbours11BLASTN+36668.gbk
284526*11315728632Island text2.2840923.495632.8932Neighbours11BLASTN84526.gbk
3162000*18601224013Island text2.5410723.418823.9148Neighbours11BLASTN162000.gbk
419966622159921934Island text1.9137321.766927.0838Neighbours11BLASTN199666.gbk
535400037631322314Island text1.4962419.248526.9887Neighbours11BLASTN+IslandViewer 354000.gbk
6523278*54807924802Island text1.9305521.713326.3509Neighbours11BLASTN+523278.gbk
7758929*78593127003Island text1.8263821.765231.7002Neighbours11BLASTN+758929.gbk
8792955*81709624142Island text1.8304621.336420.539Neighbours11BLASTN792955.gbk
9927152*94635919208Island text1.507919.449221.3485Neighbours11BLASTN927152.gbk
101556766*159609939334Island text2.0496324.320927.0164Neighbours11BLASTN+IslandViewer 1556766.gbk
111748236177920030965Island text4.0254137.819730.9944Neighbours11BLASTN+IslandViewer 1748236.gbk
122018493*204698428492Island text2.4255324.053522.7962Neighbours11BLASTN2018493.gbk
132060369*208509924731Island text1.7777825.126730.2196Neighbours11BLASTN2060369.gbk