Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015160: Odoribacter splanchnicus DSM 20712 chromosome, complete genome

NCBI: NC_015160

Host Lineage: Odoribacter splanchnicus; Odoribacter; Porphyromonadaceae; Bacteroidales; Bacteroidetes; Bacteria

General Information: Environment: Host; Isolation: abdominal abscess; Temp: Mesophile; Temp: 37C. These anaerobic bacteria were isolated from an abdominal abscess.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
163500*8109917600Island text2.3469828.559721.7018Neighbours21BLASTN+IslandViewer 63500.gbk
2136055*16470928655Island text3.3710230.473135.5186Neighbours34BLASTN136055.gbk
323127625317321898Island text1.4895736.716850.0127Neighbours312BLASTNIslandViewer 231276.gbk
4585220*60509919880Island text2.7663229.021818.3274Neighbours34BLASTN585220.gbk
5612000*63512223123Island text1.8295940.109944.0332Neighbours34BLASTN+IslandViewer 612000.gbk
6797780*82609928320Island text2.126830.826143.5369Neighbours21BLASTN+797780.gbk
793731795552518209Island text1.499438.5733.8957IslandViewer 937317.gbk
81055220108117625957Island text2.3644331.160715.025Neighbours21BLASTN+IslandViewer 1055220.gbk
91117371113567618306Island text2.0623428.781627.0496Neighbours21BLASTN+IslandViewer 1117371.gbk
101467445*149520027756Island text1.6762134.914748.009Neighbours34BLASTN+1467445.gbk
111491258151159920342Island text1.5076432.54554.0322NeighboursBLASTNIslandViewer 1491258.gbk
121697125*171550018376Island text1.6215728.574948.3859Neighbours21BLASTN+IslandViewer 1697125.gbk
131734454*175425519802Island text1.5123432.678741.5418Neighbours34IslandViewer 1734454.gbk
141786350*181459928250Island text1.7060436.21447.617Neighbours34BLASTN1786350.gbk
151961789*198445222664Island text1.5678929.652754.2408Neighbours34BLASTN1961789.gbk
162002570*203231829749Island text2.000243.93348.7024Neighbours34BLASTNIslandViewer 2002570.gbk
172145915216719121277Island text2.1008128.860821.5495Neighbours21BLASTN+IslandViewer 2145915.gbk
182191919*221579323875Island text1.7157932.350953.1459NeighboursBLASTN+2191919.gbk
192239933*226807928147Island text1.8572430.600136.8349Neighbours21BLASTN+2239933.gbk
202295010*231725322244Island text1.7507431.671451.0097Neighbours34BLASTN+2295010.gbk
212418317243852520209Island text1.7479729.038525.4375Neighbours21BLASTN2418317.gbk
222521849*254059918751Island text1.7572129.976346.9708Neighbours34BLASTN2521849.gbk
232664613268809923487Island text1.407930.611633.0552Neighbours34BLASTN+2664613.gbk
242768000*279066022661Island text1.6765229.775741.5641Neighbours34BLASTN2768000.gbk
253180193*320409923907Island text1.5162729.675353.9773Neighbours34BLASTN3180193.gbk
263301938331992417987Island text1.5200236.952840.1267Neighbours34BLASTN+IslandViewer 3301938.gbk
273448570*346730218733Island text1.4912130.520446.9302Neighbours34BLASTN3448570.gbk
283556114357673320620Island text2.0981228.906230.6006Neighbours21BLASTNIslandViewer 3556114.gbk
293585354360400918656Island text2.2920328.854647.8195Neighbours21BLASTN3585354.gbk
303729628374953219905Island text1.7549530.394352.7896Neighbours34BLASTN+3729628.gbk
313749636*377334023705Island text1.6419328.143252.8993Neighbours343749636.gbk
323996764*401824021477Island text2.5427128.745119.8441Neighbours21BLASTN3996764.gbk
334285542*433244746906Island text1.7959535.406335.467Neighbours21BLASTN+IslandViewer 4285542.gbk
344356686437814521460Island text2.6455428.802333.7556Neighbours34BLASTN4356686.gbk