Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015152: Spirochaeta sp. Buddy chromosome, complete genome

NCBI: NC_015152

Host Lineage: Sphaerochaeta globosa; Sphaerochaeta; Spirochaetaceae; Spirochaetales; Spirochaetes; Bacteria

General Information: Country: Russia; Environment: Hot spring, Marine; Isolation: Marine hot spring; USSR, Shiashkoten island; Temp: Hyperthermophile; Temp: 65C. This is a genus of spirochetes with a flexible, undulating, spiral-shaped body.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
127250029949426995Island text1.6026328.389519.4055Neighbours21BLASTN+IslandViewer 272500.gbk
230750033160324104Island text1.5835439.564440.3893IslandViewer 307500.gbk
338950042209932600Island text2.3123636.997927.3354Neighbours21BLASTNIslandViewer 389500.gbk
41230995*125479223798Island text1.9402138.118641.5276Neighbours376BLASTN+1230995.gbk
51341353*136519323841Island text2.2368539.525141.992Neighbours376BLASTN1341353.gbk
61602412*163168629275Island text2.373237.521816.4106Neighbours21BLASTN+IslandViewer 1602412.gbk
71994659*201686122203Island text1.6110733.000548.9265Neighbours21BLASTN+1994659.gbk
82026049205449328445Island text1.894934.83419.172Neighbours312+IslandViewer 2026049.gbk
92528399*254787419476Island text1.7203528.739128.4383Neighbours312BLASTN+IslandViewer 2528399.gbk
102549756*261584366088Island text2.0575232.907520.8087Neighbours21BLASTN+IslandViewer 2549756.gbk
112622000264159919600Island text1.5630530.892521.4411Neighbours312+IslandViewer 2622000.gbk
122831566285700925444Island text1.8868536.12920.7799Neighbours312IslandViewer 2831566.gbk
132887414291009922686Island text1.4431632.386923.8153Neighbours312BLASTN+IslandViewer 2887414.gbk
143100312*312602525714Island text2.1372438.060243.3982Neighbours376BLASTN+3100312.gbk