Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015151: Vulcanisaeta moutnovskia 768-28 chromosome, complete genome

NCBI: NC_015151

Host Lineage: Vulcanisaeta moutnovskia; Vulcanisaeta; Thermoproteaceae; Thermoproteales; Crenarchaeota; Archaea

General Information: Hyperthermophilic archaeon. A hyperthermophilic obligately anaerobic acidophile isolated from a hot spring in Kamchatka, Russia.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1443529*46489921371Island text1.7261428.237547.3363Neighbours7BLASTN443529.gbk
2665346*68847923134Island text1.7383325.936331.5995Neighbours21+665346.gbk
3953461*99420140741Island text1.6280334.006535.8612Neighbours7BLASTN953461.gbk
41063617108308519469Island text1.5766128.937743.8604Neighbours7BLASTN1063617.gbk
51162647118205919413Island text1.6174427.279949.3087Neighbours71162647.gbk
61218390123710918720Island text1.7898827.046920.7273Neighbours21BLASTN+1218390.gbk
71403500*142209118592Island text1.7650526.255546.3211Neighbours7BLASTN+1403500.gbk
81427965*150709979135Island text1.9996434.048542.3823Neighbours7BLASTN+1427965.gbk
91872280190759935320Island text1.6816330.430944.3417Neighbours7BLASTN+1872280.gbk
102285175*230699921825Island text1.5195127.474542.8554Neighbours7BLASTN+2285175.gbk