Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_015146: Arthrobacter phenanthrenivorans Sphe3 plasmid pASPHE301, complete

NCBI: NC_015146

Host Lineage: Arthrobacter phenanthrenivorans; Arthrobacter; Micrococcaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Country: Greece; Environment: Soil; Isolation: Creosote polluted soil at Perivleptos; Temp: Mesophile; Temp: 30C. Arthrobacter phenanthrenivorans is able to grow with phenanthrene as a sole carbon source. In addition, this organism transports phenanthrene into the cell either by passive diffusion when cells are grown on glucose, or by an active transport system when phenanthrene is the sole carbon source.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
114456516309918535Island text1.552823.364519.1802Neighbours11BLASTN+144565.gbk