Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015145: Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genome

NCBI: NC_015145

Host Lineage: Arthrobacter phenanthrenivorans; Arthrobacter; Micrococcaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Country: Greece; Environment: Soil; Isolation: Creosote polluted soil at Perivleptos; Temp: Mesophile; Temp: 30C. Arthrobacter phenanthrenivorans is able to grow with phenanthrene as a sole carbon source. In addition, this organism transports phenanthrene into the cell either by passive diffusion when cells are grown on glucose, or by an active transport system when phenanthrene is the sole carbon source.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
19239712169429298Island text1.8812721.831634.4115Neighbours11BLASTN+92397.gbk
21045264108425238989Island text2.8052125.186420.5665Neighbours11BLASTN+1045264.gbk
31107500112752020021Island text1.555321.38531.8504Neighbours11BLASTN+1107500.gbk
42693749273661842870Island text2.4227624.596823.095Neighbours11BLASTN+IslandViewer 2693749.gbk
52942500*296157319074Island text1.5402518.35799.28249Neighbours11BLASTNIslandViewer 2942500.gbk
62994418*301475220335Island text1.4678119.759226.946Neighbours11BLASTNIslandViewer 2994418.gbk
73236445327405637612Island text4.2680331.472431.5367Neighbours11BLASTN+IslandViewer 3236445.gbk
83657103368692829826Island text2.246920.203417.2689Neighbours11BLASTN+IslandViewer 3657103.gbk
94191745421509923355Island text1.6797219.159721.2328Neighbours11BLASTNIslandViewer 4191745.gbk
104232283*426249930217Island text2.1630121.524721.2092Neighbours11BLASTN4232283.gbk