Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015144: Weeksella virosa DSM 16922 chromosome, complete genome

NCBI: NC_015144

Host Lineage: Weeksella virosa; Weeksella; Flavobacteriaceae; Flavobacteriales; Bacteroidetes; Bacteria

General Information: Environment: Host; Isolation: Human urine; Temp: Mesophile; Country:USA: North Carolina. Weeksella virosa is a nonsaccharolytic, oxidase- and catalase-positive, gram-negative rod. It has been isolated mainly from the female genitourinary tract.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1477838793540153Island text1.50626.147830.0617Neighbours21BLASTN+IslandViewer 47783.gbk
212450014492920430Island text1.5506219.844432.1854Neighbours21BLASTN+124500.gbk
323746726913731671Island text2.1390617.829628.6616Neighbours21+237467.gbk
4367278*39182424547Island text2.0003621.677835.8207Neighbours21BLASTN+367278.gbk
5545999*56850022502Island text1.5482818.190731.3924Neighbours21BLASTN545999.gbk
6693958*71415920202Island text1.7762117.3831.3558Neighbours21BLASTN693958.gbk
7734726*76451229787Island text1.6735818.958727.3029Neighbours21BLASTN+IslandViewer 734726.gbk
8802288*82713324846Island text1.9921721.514930.527Neighbours21BLASTN+802288.gbk
990000092361623617Island text1.7481219.658133.0641Neighbours21BLASTN+900000.gbk
10997587*102029322707Island text1.4185918.002227.8536Neighbours21BLASTN+997587.gbk
111284453130816623714Island text1.4900720.361134.3099Neighbours21BLASTN+IslandViewer 1284453.gbk
121333179*136149328315Island text1.9749922.602732.1207Neighbours21BLASTN1333179.gbk
131453500*147652223023Island text1.8883620.305729.9Neighbours21BLASTN+1453500.gbk
141526669*154801221344Island text1.5612917.160130.8259Neighbours21BLASTN1526669.gbk
151576047*160088924843Island text2.155723.074934.0406Neighbours21BLASTN+1576047.gbk
162053969*207637122403Island text1.6869321.46527.7947Neighbours21BLASTN2053969.gbk