Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015138: Acidovorax avenae subsp. avenae ATCC 19860 chromosome, complete

NCBI: NC_015138

Host Lineage: Acidovorax avenae; Acidovorax; Comamonadaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Country: USA; Environment: Host; Isolation: maize leaf; Temp: Mesophile. This organism causes disease in a wide range of economically important plants like rice, corn and sugarcane.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
111600416004Island text1.8113322.433333.297Neighbours11BLASTNIslandViewer 1.gbk
220132322011418792Island text1.6196615.110216.1713Neighbours11BLASTNIslandViewer 201323.gbk
327250029566023161Island text1.9944218.7922.2652Neighbours11BLASTN+272500.gbk
432238634172219337Island text1.5241916.193531.971Neighbours11BLASTN+322386.gbk
569386571749823634Island text1.5023115.688111.5972Neighbours11BLASTN+IslandViewer 693865.gbk
6765497*79476529269Island text2.5969428.095843.2355Neighbours11BLASTN+IslandViewer 765497.gbk
71016000103760521606Island text1.6890815.678613.8466Neighbours11BLASTN1016000.gbk
81143015116543022416Island text1.6328916.726514.7937Neighbours11BLASTN+IslandViewer 1143015.gbk
91582458*160012917672Island text1.5992216.126613.6009Neighbours11BLASTN1582458.gbk
102025000*204785422855Island text1.9289519.139121.6232Neighbours11BLASTN2025000.gbk
112069739210074231004Island text2.4781122.6818.7018Neighbours11BLASTN+IslandViewer 2069739.gbk
122110149213484224694Island text2.0040319.298624.2356Neighbours11BLASTN+2110149.gbk
132270181229090620726Island text1.5841716.725421.1536Neighbours11BLASTN+2270181.gbk
142299100232415125052Island text2.6624720.756824.9157Neighbours11BLASTN2299100.gbk
152364500*238381719318Island text1.5959717.506719.6172Neighbours11BLASTN+IslandViewer 2364500.gbk
163022414304672924316Island text1.8284315.834818.2056Neighbours11BLASTN+3022414.gbk
173160764*318411723354Island text1.6531115.299711.0732Neighbours11BLASTN3160764.gbk
183809732383322923498Island text1.5677515.539928.018Neighbours11BLASTN3809732.gbk
193927411394835920949Island text1.5696716.827819.2959Neighbours11BLASTN3927411.gbk
204103457412794224486Island text2.7634622.763128.1559Neighbours11BLASTN+IslandViewer 4103457.gbk
214175831419502219192Island text1.5369215.430418.3031Neighbours11BLASTN4175831.gbk
224205986*423312827143Island text2.75122.224117.8527Neighbours11BLASTN+IslandViewer 4205986.gbk
234246787426900822222Island text2.2750819.031938.1211Neighbours11BLASTN4246787.gbk
244584846460933524490Island text1.7163717.79621.0573Neighbours11BLASTN+4584846.gbk
254666544468852321980Island text1.6851619.410419.4931Neighbours11BLASTN+4666544.gbk
264905935493092624992Island text1.594716.3514.7521Neighbours11BLASTN4905935.gbk
275046921*506809921179Island text1.5480317.770122.4885Neighbours11BLASTN+IslandViewer 5046921.gbk
285276857*530246825612Island text1.9734921.777723.2637Neighbours11BLASTN+IslandViewer 5276857.gbk
295342473536228019808Island text1.5920916.094423.4103Neighbours11BLASTN5342473.gbk