Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015137: Burkholderia sp. CCGE1001 chromosome 2, complete sequence

NCBI: NC_015137

Host Lineage: Burkholderia; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Environment: Host, Rhizosphere, Rhizosphere-colonizing; Temp: Mesophile.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
186894488697218029Island text1.4985225.419518.2726Neighbours11BLASTN+IslandViewer 868944.gbk
21207769122586118093Island text1.5025821.753417.8767Neighbours11BLASTN+IslandViewer 1207769.gbk
32582467260971427248Island text2.3300730.890835.9999Neighbours11BLASTNIslandViewer 2582467.gbk
42616222267258356362Island text2.6031229.834238.379Neighbours11BLASTN+IslandViewer 2616222.gbk