Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015136: Burkholderia sp. CCGE1001 chromosome 1, complete sequence

NCBI: NC_015136

Host Lineage: Burkholderia; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Environment: Host, Rhizosphere, Rhizosphere-colonizing; Temp: Mesophile.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
112119721197Island text2.6098733.762625.2406Neighbours11BLASTN+IslandViewer 1.gbk
281370183609922399Island text1.3811922.932928.3957Neighbours11BLASTNIslandViewer 813701.gbk
391227693628224007Island text1.4973518.318319.9293Neighbours11BLASTN912276.gbk
41101725113666534941Island text1.6797323.96422.4182Neighbours11BLASTN+IslandViewer 1101725.gbk
51141925117018328259Island text1.6593927.401522.317Neighbours11BLASTN+IslandViewer 1141925.gbk
61301576132928527710Island text2.4323130.382637.9857Neighbours11BLASTN+IslandViewer 1301576.gbk
72021799204813726339Island text1.6607122.466519.0422Neighbours11BLASTNIslandViewer 2021799.gbk
82282488232709944612Island text1.9042925.667622.7943Neighbours11BLASTN+IslandViewer 2282488.gbk
93127930315102223093Island text1.8560426.33920.5578Neighbours11BLASTNIslandViewer 3127930.gbk