Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015125: Microbacterium testaceum StLB037, complete genome

NCBI: NC_015125

Host Lineage: Microbacterium testaceum; Microbacterium; Microbacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Microbacterium testaceum has been cultured from plant tissue and does not cause disease. This organism is found in corn, sorghum and other agriculturally significant crops.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1222231*26106738837Island text2.1523517.578115.7657NeighboursBLASTN+IslandViewer 222231.gbk
2788931*81459925669Island text2.3498815.607112.6826NeighboursBLASTN+IslandViewer 788931.gbk
31136734*116252925796Island text2.1617816.422321.3659NeighboursBLASTN+IslandViewer 1136734.gbk
41597600*161635218753Island text1.5355611.946713.3086NeighboursBLASTNIslandViewer 1597600.gbk
51668780*169404425265Island text1.6848513.876116.0603NeighboursBLASTNIslandViewer 1668780.gbk
62288487*231248023994Island text2.3285915.211618.5508Neighbours11BLASTNIslandViewer 2288487.gbk
72443945246359819654Island text1.7802312.845320.7135NeighboursBLASTNIslandViewer 2443945.gbk
83284095330809924005Island text1.791915.321919.2683NeighboursBLASTN+IslandViewer 3284095.gbk