Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_015065: Acidobacterium sp. MP5ACTX9 plasmid pACIX902, complete sequence

NCBI: NC_015065

Host Lineage: Granulicella tundricola; Granulicella; Acidobacteriaceae; Acidobacteriales; Acidobacteria; Bacteria

General Information: Soil bacterial communities, active at low temperatures and nutrient limiting conditions in Arctic alpine tundra. Isolated from tundra soil at the Malla Nature Reserve, KilpisjƤrvi, Finland. Gram-negative, non-motile rods.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
118189*4245224264Island text1.7716826.079550.3974Neighbours1118189.gbk
216231720800945693Island text1.9971325.999140.968Neighbours11BLASTN+162317.gbk
323224025817425935Island text3.0421925.097349.6406Neighbours11BLASTN232240.gbk