Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015064: Acidobacterium sp. MP5ACTX9 chromosome, complete genome

NCBI: NC_015064

Host Lineage: Granulicella tundricola; Granulicella; Acidobacteriaceae; Acidobacteriales; Acidobacteria; Bacteria

General Information: Soil bacterial communities, active at low temperatures and nutrient limiting conditions in Arctic alpine tundra. Isolated from tundra soil at the Malla Nature Reserve, KilpisjƤrvi, Finland. Gram-negative, non-motile rods.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
110222412409921876Island text3.0433634.760128.1874Neighbours11BLASTN+IslandViewer 102224.gbk
215160717416622560Island text2.2579231.259126.1847Neighbours11IslandViewer 151607.gbk
3649201*66717617976Island text1.8874133.365852.9297NeighboursBLASTN+IslandViewer 649201.gbk
492709694684319748Island text3.2013434.688752.2369Neighbours11BLASTN+IslandViewer 927096.gbk
51021483103933117849Island text3.2285535.274856.0909Neighbours11BLASTNIslandViewer 1021483.gbk
61238899125702718129Island text1.9922934.949553.9469Neighbours11BLASTN+1238899.gbk
71268223128609917877Island text3.1119834.046753.6241Neighbours11BLASTN1268223.gbk
81355065*137882323759Island text2.4531233.922153.8616Neighbours11BLASTN+1355065.gbk
91722776*174138218607Island text1.9363433.520853.1003Neighbours11BLASTN+IslandViewer 1722776.gbk
101984662201022125560Island text2.6296135.426450.9932Neighbours11BLASTN+IslandViewer 1984662.gbk
112341152*237105229901Island text1.9255133.983941.8494Neighbours11BLASTN+IslandViewer 2341152.gbk
122421034246126740234Island text2.8446134.53153.958Neighbours11BLASTN+IslandViewer 2421034.gbk
132494000*251661922620Island text1.7043634.341652.814Neighbours11BLASTNIslandViewer 2494000.gbk
142871152289427523124Island text2.5740435.308154.5581Neighbours11BLASTNIslandViewer 2871152.gbk
152900907292546124555Island text1.8202235.379454.1815Neighbours11BLASTNIslandViewer 2900907.gbk
163370840339522724388Island text2.5549434.073852.7896Neighbours11BLASTNIslandViewer 3370840.gbk