Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015062: Rahnella sp. Y9602 plasmid pRAHAQ01, complete sequence

NCBI: NC_015062

Host Lineage: Rahnella; Rahnella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Country: USA; Environment: Fresh water, Human intestinal microflora; Isolation: DOE Field Research Center (FRC), Oak Ridge; Temp: Mesophile. Rahnella sp. strain Y9602 is a gammaproteobacterium isolated from contaminated subsurface soils that is capable of promoting uranium phosphate mineralization as a result of constitutive phosphatase activity.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1588268328124456Island text2.464639.530622.1677Neighbours41BLASTN+58826.gbk
29996912011920151Island text1.5629734.729122.6276Neighbours41BLASTN+99969.gbk
313035915526724909Island text2.0838239.299627.8092Neighbours41BLASTN130359.gbk