Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015061: Rahnella sp. Y9602 chromosome, complete genome

NCBI: NC_015061

Host Lineage: Rahnella; Rahnella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Country: USA; Environment: Fresh water, Human intestinal microflora; Isolation: DOE Field Research Center (FRC), Oak Ridge; Temp: Mesophile. Rahnella sp. strain Y9602 is a gammaproteobacterium isolated from contaminated subsurface soils that is capable of promoting uranium phosphate mineralization as a result of constitutive phosphatase activity.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1366552*38559319042Island text1.528929.632823.8945Neighbours41BLASTNIslandViewer 366552.gbk
259624762407627830Island text2.4083543.595322.5156Neighbours41BLASTN+IslandViewer 596247.gbk
31251905128092529021Island text1.9515239.360429.5351Neighbours41BLASTN+IslandViewer 1251905.gbk
41481500*150744925950Island text2.6374845.53119.1757Neighbours41BLASTN+IslandViewer 1481500.gbk
51598920163040531486Island text3.4232347.368822.0426Neighbours41BLASTN+IslandViewer 1598920.gbk
61902251193341231162Island text4.0608750.280123.6493Neighbours41BLASTN+IslandViewer 1902251.gbk
72770856279559924744Island text2.0037638.839326.3674Neighbours41BLASTN+IslandViewer 2770856.gbk
82867027*288717520149Island text1.5302830.052317.8402Neighbours41BLASTN+2867027.gbk
92927707295457026864Island text2.5053243.125520.9963Neighbours41BLASTN+2927707.gbk
103111211313800526795Island text1.8575234.836729.2687Neighbours41BLASTN+IslandViewer 3111211.gbk
113147691*317026522575Island text1.4371133.730522.2195Neighbours41BLASTN+3147691.gbk
123725921375022024300Island text1.7113832.533723.7357Neighbours41BLASTN+3725921.gbk
133801927382632824402Island text1.4045131.572231.8796Neighbours41BLASTN3801927.gbk
143840463*391463974177Island text3.1193144.954225.8006Neighbours41BLASTN+IslandViewer 3840463.gbk
154203767*424223938473Island text1.7368433.688122.1005Neighbours41BLASTN4203767.gbk
164286000431231226313Island text1.9710938.768625.8472Neighbours41BLASTN+IslandViewer 4286000.gbk