Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_015057: Acidobacterium sp. MP5ACTX9 plasmid pACIX901, complete sequence

NCBI: NC_015057

Host Lineage: Granulicella tundricola; Granulicella; Acidobacteriaceae; Acidobacteriales; Acidobacteria; Bacteria

General Information: Soil bacterial communities, active at low temperatures and nutrient limiting conditions in Arctic alpine tundra. Isolated from tundra soil at the Malla Nature Reserve, KilpisjƤrvi, Finland. Gram-negative, non-motile rods.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1307435410123359Island text2.3633230.775854.3773Neighbours11BLASTN30743.gbk
213558516009924515Island text2.7663730.647554.2665Neighbours11BLASTN135585.gbk
3241103*26799426892Island text2.410929.432153.7946Neighbours11BLASTN+241103.gbk
426800029073522736Island text1.9214731.204454.6747Neighbours11BLASTN268000.gbk
536190238409922198Island text1.8485729.933754.8727Neighbours11BLASTN361902.gbk
644969947559925901Island text2.2623629.708853.8433Neighbours11BLASTN+449699.gbk