Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_014976: Bacillus subtilis BSn5 chromosome, complete genome

NCBI: NC_014976

Host Lineage: Bacillus subtilis; Bacillus; Bacillaceae; Bacillales; Firmicutes; Bacteria

General Information: Bacillus subtilis BSn5 was isolated from Amorphophallus konjac calli tissue culture. Bacilllus subtilis BSn5 could inhibit Erwinia carotovora subsp. carotovora strain SCG1, which causes Amorphophallus soft rot disease and affects Amorphophallus industry development This organism was one of the first bacteria studied, and was named Vibrio subtilis in 1835 and renamed Bacillus subtilis in 1872. It is one of the most well characterized bacterial organisms, and is a model system for cell differentiation and development. This soil bacterium can divide asymmetrically, producing an endospore that is resistant to environmental factors such as heat, acid, and salt, and which can persist in the environment for long periods of time. The endospore is formed at times of nutritional stress, allowing the organism to persist in the environment until conditions become favorable. Prior to the decision to produce the spore the bacterium might become motile, through the production of flagella, and also take up DNA from the environment through the competence system.The sporulation process is complex and involves the coordinated regulation of hundreds of genes in the genome. This initial step results in the coordinated asymmetric cellular division and endospore formation through multiple stages that produces a single spore from the mother cell.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
111636816368Island text2.4499732.153417.2742Neighbours21BLASTN+1.gbk
2179093738319475Island text1.8191928.303320.3344Neighbours21BLASTN+17909.gbk
317068319746126779Island text2.2421130.525519.0881Neighbours21BLASTN+IslandViewer 170683.gbk
440391942245518537Island text1.7699328.972124.4457Neighbours21BLASTN403919.gbk
562793567827950345Island text1.8616729.513232.1376Neighbours21BLASTN+IslandViewer 627935.gbk
668400070266718668Island text1.7807129.020219.1517Neighbours21BLASTN+IslandViewer 684000.gbk
775912979330034172Island text5.5241235.275716.682Neighbours21BLASTN+759129.gbk
81174430*119919524766Island text2.2060243.051247.5283Neighbours32BLASTN+1174430.gbk
91671594168974418151Island text1.9559128.286122.5423Neighbours21BLASTN+1671594.gbk
102024364204536220999Island text1.7875929.674342.898Neighbours21BLASTN+2024364.gbk
112117567*214173924173Island text1.8136233.041524.3945Neighbours21BLASTN+IslandViewer 2117567.gbk
122175667219414818482Island text1.6100528.611418.3884Neighbours21BLASTN+2175667.gbk
132231984*225555323570Island text2.2705339.04252.2205Neighbours32BLASTN2231984.gbk
142420000244974729748Island text4.4973333.560617.6206Neighbours21BLASTN+IslandViewer 2420000.gbk
152735423*276136725945Island text2.1749533.037815.1431Neighbours21BLASTN2735423.gbk
162867454288838520932Island text1.6356727.860538.269Neighbours21BLASTN+2867454.gbk
172981777300438922613Island text1.5285533.627242.0088Neighbours31BLASTN+2981777.gbk
183469395*348959920205Island text2.0092930.402319.8948Neighbours21BLASTN+IslandViewer 3469395.gbk
193546884356662219739Island text1.5687529.824351.5654Neighbours21BLASTN+3546884.gbk