Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014973: Geobacter sp. M18 chromosome, complete genome

NCBI: NC_014973

Host Lineage: Geobacter; Geobacter; Geobacteraceae; Desulfuromonadales; Proteobacteria; Bacteria

General Information: Environment: Sediment; Temp: Mesophile. Nitrogen fixation. Geobacillus sp. (strain M18) is an anaerobic, chemolithotrophic, iron-reducing Gram-negative bacterium.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1544497854124093Island text2.6447733.779233.6744Neighbours11BLASTN+IslandViewer 54449.gbk
224300026234519346Island text2.1714931.449423.0387Neighbours11BLASTN243000.gbk
3493500*51995726458Island text2.9448836.360731.8882Neighbours11BLASTN+IslandViewer 493500.gbk
4595153*62305327901Island text1.9980329.401838.5187Neighbours33BLASTN+IslandViewer 595153.gbk
51071500110044928950Island text4.3407647.607934.0088Neighbours11BLASTN+IslandViewer 1071500.gbk
61136794116320626413Island text2.9610637.951530.5671Neighbours33BLASTNIslandViewer 1136794.gbk
71257625*128014722523Island text2.0514928.842442.8067NeighboursBLASTNIslandViewer 1257625.gbk
81336500135559919100Island text2.3166330.212831.7198Neighbours11BLASTNIslandViewer 1336500.gbk
91598429162562627198Island text2.5840233.34332.1198Neighbours11BLASTN1598429.gbk
101767798*179025122454Island text1.58129.444329.8453Neighbours11BLASTN+1767798.gbk
111941500*196723925740Island text2.4857341.327230.1326Neighbours11BLASTN+1941500.gbk
121992694202170029007Island text3.1405639.616933.9015Neighbours11BLASTN+IslandViewer 1992694.gbk
132425994*244668020687Island text2.2644332.454630.8485Neighbours11BLASTN+IslandViewer 2425994.gbk
142693672271365719986Island text2.0096529.356226.5989Neighbours33BLASTNIslandViewer 2693672.gbk
152894248291621621969Island text1.8336929.003526.2578Neighbours33BLASTNIslandViewer 2894248.gbk
162945942297114425203Island text3.5063739.120932.2895Neighbours11BLASTN+IslandViewer 2945942.gbk
173151701*317705425354Island text2.5915234.213731Neighbours11BLASTN3151701.gbk
183290545*331870328159Island text5.0360448.642641.7315Neighbours33BLASTN+IslandViewer 3290545.gbk
193414459*344509930641Island text2.63931.386629.9742Neighbours33BLASTN+IslandViewer 3414459.gbk
203452100349125939160Island text5.1885947.186939.2115Neighbours382BLASTN+IslandViewer 3452100.gbk
213690371372634035970Island text3.1209837.823127.257Neighbours11BLASTN+IslandViewer 3690371.gbk
224174668*421021135544Island text3.2134742.219723.8508Neighbours11BLASTN+IslandViewer 4174668.gbk
234503054*452458621533Island text2.1902731.325423.4418Neighbours11BLASTNIslandViewer 4503054.gbk
244630132*468542755296Island text2.4537333.836827.1401Neighbours11BLASTN+IslandViewer 4630132.gbk
255099543513368034138Island text3.347641.705537.8222Neighbours33BLASTN+IslandViewer 5099543.gbk