Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014972: Desulfobulbus propionicus DSM 2032 chromosome, complete genome

NCBI: NC_014972

Host Lineage: Desulfobulbus propionicus; Desulfobulbus; Desulfobulbaceae; Desulfobacterales; Proteobacteria; Bacteria

General Information: Country: Germany; Environment: Fresh water, Marine, Sediment; Isolation: Freshwater mud in Germany; Temp: Mesophile; Temp: 37C. Desulfobulbus propionicus was isolated from freshwater mud and is able to completely oxidize propionate to acetate.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
113718416221025027Island text1.8791331.47529.5651Neighbours11BLASTN+137184.gbk
2210500*23825627757Island text3.1655243.285227.9037Neighbours11BLASTN+210500.gbk
3247028*27012323096Island text1.670331.037226.2029Neighbours11BLASTN+247028.gbk
432205636951047455Island text2.048236.043326.267Neighbours23BLASTN+322056.gbk
5409884*42970419821Island text1.5755130.955118.8634Neighbours11BLASTN+409884.gbk
6480355*50253922185Island text1.9735933.337227.3142Neighbours11BLASTN+480355.gbk
754414658609941954Island text2.0188335.035922.7085Neighbours11BLASTN+544146.gbk
8847099*87930632208Island text1.738330.649436.4744Neighbours11BLASTN847099.gbk
91035124106227327150Island text1.5583234.508829.4067Neighbours11BLASTN1035124.gbk
101126426115904932624Island text2.7907740.140427.1353Neighbours11BLASTN+1126426.gbk
111407632*143905731426Island text1.9707937.829325.6847Neighbours11BLASTN+1407632.gbk
121510914*153845127538Island text2.3705739.163425.9128Neighbours11BLASTN+1510914.gbk
131621850*164648324634Island text1.7092731.743619.5533Neighbours33BLASTN+1621850.gbk
141923035194350220468Island text1.7975332.063220.7739Neighbours11BLASTN+1923035.gbk
151982315200871426400Island text2.1799638.646226.7124Neighbours11BLASTN1982315.gbk
162089003*210762418622Island text1.6313330.298530.7528Neighbours11BLASTN+2089003.gbk
172328228236343935212Island text2.4490237.678938.5476Neighbours14BLASTN+2328228.gbk
182371647239964127995Island text2.6504244.527131.9022Neighbours33BLASTN2371647.gbk
192503107252314120035Island text1.8516632.316428.621Neighbours11BLASTN2503107.gbk
202659388*270546746080Island text2.5504540.612231.2626Neighbours11BLASTN+2659388.gbk
212771902279204920148Island text1.8715431.815431.6116Neighbours11BLASTN+2771902.gbk
222798670*282159922930Island text1.9968233.208326.1204Neighbours11BLASTN+2798670.gbk
232980974*299955018577Island text2.7868731.520544.707Neighbours33BLASTN2980974.gbk
243000138*302046120324Island text2.2975530.684628.2129Neighbours11BLASTN3000138.gbk
253227500*325015522656Island text1.8149532.348835.3521Neighbours11BLASTN3227500.gbk
263604534*363388729354Island text2.5009238.448423.5723Neighbours11BLASTN+3604534.gbk
273688000*371861130612Island text2.89347.335421.8375Neighbours11BLASTN+3688000.gbk
283771642379462522984Island text1.6126631.347333.6399Neighbours11BLASTN3771642.gbk