Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_014966: Vibrio vulnificus MO6-24/O chromosome II, complete sequence

NCBI: NC_014966

Host Lineage: Vibrio vulnificus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Organisms of this species are opportunistic pathogens that can attack immunocompromised patients and causes gastroenteritis (inflammation of mucous membranes of stomach and intestine), wound infections, and primary septicemia (spread of the organism through the blood). This organism is the major cause of death from eating raw oysters, especially in people with liver damage. It only affects humans and other primates.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
132805635209924044Island text1.4432631.414221.4033BLASTNIslandViewer 328056.gbk
243134244993418593Island text1.5362628.264826.8425BLASTN+431342.gbk
363835565833319979Island text1.5341228.04930.2047Neighbours42BLASTN638355.gbk
479531181957424264Island text1.6536929.833424.4061Neighbours42BLASTN+IslandViewer 795311.gbk
591944294238722946Island text1.7657930.861420.3983Neighbours41BLASTN+IslandViewer 919442.gbk
61668822*169214323322Island text1.7517729.596327.1836Neighbours41BLASTN+IslandViewer 1668822.gbk