Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_014965: Vibrio vulnificus MO6-24/O chromosome I, complete sequence

NCBI: NC_014965

Host Lineage: Vibrio vulnificus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Organisms of this species are opportunistic pathogens that can attack immunocompromised patients and causes gastroenteritis (inflammation of mucous membranes of stomach and intestine), wound infections, and primary septicemia (spread of the organism through the blood). This organism is the major cause of death from eating raw oysters, especially in people with liver damage. It only affects humans and other primates.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1670115*69715627042Island text1.5959433.897754.5347BLASTNIslandViewer 670115.gbk
2997344*103709339750Island text1.9638836.758628.3022Neighbours21BLASTN+IslandViewer 997344.gbk
31428902*1558191129290Island text1.7018832.861122.098Neighbours314BLASTN+IslandViewer 1428902.gbk
42200974222559924626Island text1.624431.463436.1141Neighbours41BLASTN+IslandViewer 2200974.gbk
52954876*297471119836Island text1.881432.953132.9825Neighbours21BLASTNIslandViewer 2954876.gbk