Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014964: Thermoanaerobacter brockii subsp. finnii Ako-1 chromosome, complete

NCBI: NC_014964

Host Lineage: Thermoanaerobacter brockii; Thermoanaerobacter; Thermoanaerobacteraceae; Thermoanaerobacterales; Firmicutes; Bacteria

General Information: Isolation: Lake sediment; Africa, Lake Kivu; Temp: Thermophile; Temp: 65C. Thermoanaerobacter brockii is a thermophilic gram positive anaerobe that has been isolated from lake sediment, oil wells and hot springs. This organism ferments hexoses and pyruvate and can reduce thiosulfate to hydrogen sulfide.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
135862*5876822907Island text2.1256221.653138.1532Neighbours21BLASTN+IslandViewer 35862.gbk
2388458*44542856971Island text3.3964726.354148.0837Neighbours21BLASTN+388458.gbk
355791057776519856Island text1.9108921.476841.6068Neighbours21BLASTN557910.gbk
4923681*96813644456Island text2.4439923.887841.7164Neighbours21BLASTN+IslandViewer 923681.gbk
51169925118860418680Island text1.5024122.726234.5901Neighbours21BLASTNIslandViewer 1169925.gbk
61309845*133261422770Island text2.1514421.80239.4567Neighbours21BLASTN1309845.gbk
71353939*137489920961Island text2.7416131.428841.5541Neighbours21BLASTN+1353939.gbk
81608575163560427030Island text1.855119.8236.3382Neighbours21BLASTN1608575.gbk
91695000*172192326924Island text2.4908329.677840.1507Neighbours21BLASTN+IslandViewer 1695000.gbk
102199252*221954720296Island text2.3695126.811449.8951Neighbours21BLASTN2199252.gbk
112237979*226077622798Island text3.3048430.311750.5205Neighbours21BLASTN+2237979.gbk
122272413*229721224800Island text1.7147225.19736.8572Neighbours21BLASTN+IslandViewer 2272413.gbk
132301835*232709925265Island text2.0571429.106438.225Neighbours21BLASTN+IslandViewer 2301835.gbk