Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014963: Terriglobus saanensis SP1PR4 chromosome, complete genome

NCBI: NC_014963

Host Lineage: Terriglobus saanensis; Terriglobus; Acidobacteriaceae; Acidobacteriales; Acidobacteria; Bacteria

General Information: Strain SP1PR4 was isolated from the Saana fell, Arctic-alpine tundra of Lappland. This organism is a member of the Acidobacteria which are abundant in slightly acidic soils.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
111301514159928585Island text1.6789430.369726.7146Neighbours11BLASTN+IslandViewer 113015.gbk
255800058218424185Island text1.4661229.815252.0953Neighbours11BLASTN+IslandViewer 558000.gbk
376703479552128488Island text1.8591529.326342.7691Neighbours11BLASTN+IslandViewer 767034.gbk
41951108197421923112Island text1.6001629.094730.8381Neighbours11BLASTNIslandViewer 1951108.gbk
52759978278024420267Island text1.5638829.597228.3266Neighbours11IslandViewer 2759978.gbk
62946212297225326042Island text1.4993529.942940.6079Neighbours11IslandViewer 2946212.gbk
72972358*299391521558Island text1.5680229.714152.8979Neighbours11BLASTNIslandViewer 2972358.gbk
83175912319960523694Island text1.5968830.056326.1502Neighbours11BLASTNIslandViewer 3175912.gbk
93530097355131721221Island text1.4949527.790620.3983Neighbours11IslandViewer 3530097.gbk
103942363*396191219550Island text1.6007928.685948.4377Neighbours11BLASTN3942363.gbk
114091910411615324244Island text1.5589329.082347.4273Neighbours11BLASTN+4091910.gbk
124416339444369227354Island text1.6508930.37750.5052Neighbours11BLASTNIslandViewer 4416339.gbk
134569015*459584226828Island text1.6674130.759450.7561Neighbours11BLASTN4569015.gbk
144872883489666723785Island text1.5504730.439846.5139Neighbours11BLASTN4872883.gbk
155034904505612221219Island text1.5240530.688351.5721Neighbours11BLASTN+IslandViewer 5034904.gbk