Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014962: Isosphaera pallida ATCC 43644 chromosome, complete genome

NCBI: NC_014962

Host Lineage: Isosphaera pallida; Isosphaera; Planctomycetaceae; Planctomycetales; Planctomycetes; Bacteria

General Information: Country: Oregon, USA; Environment: Fresh water, Hot spring; Isolation: algal mat from Kah-nee-tah Hot Spring; Temp: Mesophile; Temp: 45C. Isosphaera pallida was isolated from an algal mat from Kah-nee-tah Hot Spring in Oregon. This organism, a member of the planctomycetes, is a thermophilic budding bacterium which is motile by gliding.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
182656384581719255Island text1.5146522.628936.6336Neighbours11BLASTN826563.gbk
23440826*346466823843Island text1.4692321.394740.3155Neighbours11BLASTN3440826.gbk
34479989*450288122893Island text1.4852919.212130.0646Neighbours11BLASTN4479989.gbk
44538122456609727976Island text1.8045224.319132.6836Neighbours11BLASTN+4538122.gbk