Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014961: Desulfurococcus mucosus DSM 2162 chromosome, complete genome

NCBI: NC_014961

Host Lineage: Desulfurococcus mucosus; Desulfurococcus; Desulfurococcaceae; Desulfurococcales; Crenarchaeota; Archaea

General Information: Country: Iceland; Environment: Fresh water, Sulfur spring; Isolation: Hot solfataric spring; Temp: Hyperthermophile; Temp: 85C. This is a hyperthermophilic anaerobic archaeon.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
150814*7524824435Island text2.0611232.984821.6424Neighbours9BLASTN+50814.gbk
2335808*35542719620Island text1.5932627.464346.513Neighbours9BLASTN+335808.gbk
341298243859925618Island text1.8231138.313232.2242BLASTNIslandViewer 412982.gbk
444571747363127915Island text1.9435233.437519.542Neighbours9BLASTN+445717.gbk
5490551*51509624546Island text1.4325129.286248.191Neighbours9BLASTN+490551.gbk
674120976447523267Island text1.5347428.772547.9596Neighbours9BLASTN+741209.gbk
796950098805118552Island text1.74328.055141.7225BLASTN969500.gbk
81071424*109751126088Island text1.4943529.103846.4795Neighbours9BLASTN+IslandViewer 1071424.gbk
91114939*113417619238Island text1.736528.995949.2894Neighbours9BLASTN1114939.gbk
101235500*125551320014Island text1.5701431.031145.5671Neighbours9BLASTN+1235500.gbk
111257414*128023622823Island text1.5078727.89750.9136Neighbours9BLASTN1257414.gbk
121283889*131108227194Island text1.7505628.788752.3176Neighbours9BLASTN1283889.gbk