Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014960: Anaerolinea thermophila UNI-1, complete genome

NCBI: NC_014960

Host Lineage: Anaerolinea thermophila; Anaerolinea; Anaerolineaceae; Anaerolineales; Chloroflexi; Bacteria

General Information: A thermophilic, Gram-negative, non-spore-forming, multicellular filamentous micro-organism isolated from thermophilic granular sludge in an upflow anaerobic sludge blanket reactor treating fried soybean-curd manufacturing waste water.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
172737*9353620800Island text1.5917933.985916.4941Neighbours11BLASTN+72737.gbk
2115614*13836022747Island text1.5354835.068118.2544Neighbours11BLASTN+115614.gbk
3216965*23507918115Island text1.8515834.280822.8834Neighbours11BLASTN216965.gbk
41380500140335922860Island text1.7854436.545534.8324BLASTN+1380500.gbk
51670778169705426277Island text1.935235.951619.4307Neighbours319+IslandViewer 1670778.gbk
61697818173573637919Island text2.2350137.532915.0372Neighbours32BLASTN+IslandViewer 1697818.gbk
71735786*180405368268Island text1.9486735.900231.9257Neighbours32BLASTN+IslandViewer 1735786.gbk
81835697*185903023334Island text1.6380433.417428.0607Neighbours32BLASTN+IslandViewer 1835697.gbk
91887000*190481217813Island text1.495235.153230.0463Neighbours32IslandViewer 1887000.gbk
101910202193181921618Island text2.0346735.260933.4572Neighbours32BLASTN+1910202.gbk
111950648197646825821Island text1.6774834.3421.6774Neighbours32BLASTNIslandViewer 1950648.gbk
122059012207944920438Island text1.7047335.039248.7432Neighbours32BLASTNIslandViewer 2059012.gbk
132111397*213474023344Island text1.7409234.344624.3757Neighbours32+IslandViewer 2111397.gbk
142141345216588024536Island text2.0166636.156917.7006Neighbours32BLASTN+IslandViewer 2141345.gbk
152371989241427742289Island text1.7459636.704232.9397Neighbours33BLASTNIslandViewer 2371989.gbk
162638562266870130140Island text1.8112939.587830.1708Neighbours11BLASTNIslandViewer 2638562.gbk
172858572289777339202Island text2.1840838.625825.8851Neighbours32BLASTN+IslandViewer 2858572.gbk
183009500*302719917700Island text1.9435933.593821.6774Neighbours319BLASTN+IslandViewer 3009500.gbk
193375807*340147125665Island text1.8139935.668821.8798Neighbours11BLASTN3375807.gbk
203410741343484124101Island text1.6878637.624628.2926Neighbours11BLASTN+3410741.gbk