Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014958: Deinococcus maricopensis DSM 21211 chromosome, complete genome

NCBI: NC_014958

Host Lineage: Deinococcus maricopensis; Deinococcus; Deinococcaceae; Deinococcales; Deinococcus-Thermus; Bacteria

General Information: Environment: Soil; Isolation: Soil, sonoran desert, USA, Arizona; Temp: Mesophile. These bacteria are resistant to high doses of ionizing radiation. Aerobic, radiation-resistant, Gram-positive bacterium.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
166120*8619320074Island text2.8596918.037121.7992Neighbours11BLASTN+IslandViewer 66120.gbk
2514225*53849724273Island text4.1734722.908130.3991Neighbours11BLASTN+IslandViewer 514225.gbk
3557208*58740830201Island text5.5524635.643626.8705Neighbours11BLASTN+IslandViewer 557208.gbk
4629459*65461225154Island text3.3308421.2326.6996Neighbours11BLASTN629459.gbk
5843456*86943725982Island text4.0693829.516336.4428Neighbours11BLASTN+IslandViewer 843456.gbk
692364694592822283Island text2.1394620.025916.5061Neighbours11BLASTN+IslandViewer 923646.gbk
71268559*129322524667Island text2.9622420.28724.7851Neighbours11BLASTN1268559.gbk
81335650*135803722388Island text2.9302219.634625.0964Neighbours11BLASTN+IslandViewer 1335650.gbk
92614399263935424956Island text3.0484821.386232.0427Neighbours11BLASTNIslandViewer 2614399.gbk
103094500*311934324844Island text1.5726420.216438.1438Neighbours11BLASTN3094500.gbk
113131191315796026770Island text1.8006818.772320.1852Neighbours11BLASTNIslandViewer 3131191.gbk
123207431*323030022870Island text2.2833626.474249.4079Neighbours11BLASTN+IslandViewer 3207431.gbk
133346500*337418227683Island text8.381641.737635.8969Neighbours11BLASTN+IslandViewer 3346500.gbk
143393855341275318899Island text1.5606317.950527.8779Neighbours11BLASTN3393855.gbk