Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014935: Nitratifractor saLSUginis DSM 16511 chromosome, complete genome

NCBI: NC_014935

Host Lineage: Nitratifractor salsuginis; Nitratifractor; ; Campylobacterales; Proteobacteria; Bacteria

General Information: Country: Japan; Isolation: Deep-sea hydrothermal vent chimney; Temp: Mesophile; Temp: 37C. This organism was isolated from the Iheya North hydrothermal field inthe Mid-Okinawa Trough, Japan. It is a strict chemolithoautotroph, growing byrespiratory nitrate reduction with H2, forming N2 as a metabolic product.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
131020*5039419375Island text1.5147838.997737.2193Neighbours333BLASTNIslandViewer 31020.gbk
234249137198429494Island text2.1787146.804238.7648Neighbours333BLASTNIslandViewer 342491.gbk
3416609*43885622248Island text1.9382838.684335.4854Neighbours333BLASTN416609.gbk
4595685*61559919915Island text1.6719636.285130.0195Neighbours333BLASTN595685.gbk
5711765*76064648882Island text2.0175644.668633.2401Neighbours333BLASTNIslandViewer 711765.gbk
6769305*78817718873Island text1.5256336.20836.9473Neighbours333BLASTN+IslandViewer 769305.gbk
7836868*85768520818Island text1.5483236.253638.9828Neighbours333BLASTN+IslandViewer 836868.gbk
8918855*94271923865Island text1.4570335.998342.3072Neighbours333BLASTN+918855.gbk
91047411*107167224262Island text1.8246745.719433.4338Neighbours333BLASTNIslandViewer 1047411.gbk
101165276119083325558Island text1.5136435.147154.4646IslandViewer 1165276.gbk
111223817*126609942283Island text1.7036238.768525.5407Neighbours333BLASTN+1223817.gbk
121287494*131489327400Island text2.0254147.25927.4874Neighbours333BLASTNIslandViewer 1287494.gbk
131389000142280833809Island text1.7555238.721230.6697Neighbours312BLASTN+IslandViewer 1389000.gbk
141511835153500523171Island text2.1306440.365133.7418Neighbours333BLASTNIslandViewer 1511835.gbk
151668461*169279424334Island text1.8618830.778853.1185Neighbours333BLASTN1668461.gbk
161704816174171036895Island text3.7041352.88422.8632Neighbours370BLASTN+IslandViewer 1704816.gbk
171834569*185596821400Island text1.8557837.761437.5572Neighbours333BLASTN+IslandViewer 1834569.gbk
181955226*198611530890Island text2.4845446.358726.2101Neighbours333BLASTN+IslandViewer 1955226.gbk
191999653*203169432042Island text2.3495846.249430.0398Neighbours333BLASTN+IslandViewer 1999653.gbk