Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014934: Cellulophaga algicola DSM 14237 chromosome, complete genome

NCBI: NC_014934

Host Lineage: Cellulophaga algicola; Cellulophaga; Flavobacteriaceae; Flavobacteriales; Bacteroidetes; Bacteria

General Information: Isolation: surfaces of algal species from the Antarctic; Temp: Mesophile. Cellulophaga algicola is a marine bacterium, commonly associated with marine diatoms, and produces extracellular enzymes which degrade agar and other complex compounds.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
111341*3979528455Island text3.4834625.501140.6429Neighbours21BLASTN11341.gbk
221900023703418035Island text1.8929617.90827.6038Neighbours21BLASTN+IslandViewer 219000.gbk
3244587*26840323817Island text1.4204819.978129.5651Neighbours21BLASTN+IslandViewer 244587.gbk
4701085*72182720743Island text1.9734218.277831.9284Neighbours21BLASTN701085.gbk
576589278918023289Island text2.211117.436817.8584Neighbours21BLASTNIslandViewer 765892.gbk
6869715*89717727463Island text2.4329624.189535.8538Neighbours21BLASTN869715.gbk
71315106*134075625651Island text3.6920225.972843.3749Neighbours21BLASTN1315106.gbk
81825947184916223216Island text1.3458219.005424.1199Neighbours21BLASTN+IslandViewer 1825947.gbk
92223822224809924278Island text1.7823317.616123.389Neighbours21BLASTN+2223822.gbk
102339196*235823719042Island text2.0028419.025633.1922Neighbours21BLASTN2339196.gbk
112482934*250686923936Island text1.6627419.407132.6628Neighbours21BLASTN2482934.gbk
122519999*253978419786Island text1.5129218.544631.3217Neighbours21BLASTN2519999.gbk
132985273*301709931827Island text3.2070725.110940.5254Neighbours21BLASTN+2985273.gbk
143218423*324209923677Island text1.6008518.60130.028Neighbours21BLASTN+IslandViewer 3218423.gbk
153751612*378009928488Island text1.8553719.972428.9624Neighbours21BLASTN3751612.gbk
163786132380516419033Island text1.7089517.710418.0046Neighbours21BLASTN+IslandViewer 3786132.gbk
173809845*382914719303Island text1.5575118.533219.2989Neighbours21BLASTN+IslandViewer 3809845.gbk
184164603418608321481Island text1.9354318.594513.2487Neighbours21BLASTN+4164603.gbk
194259670428264822979Island text1.8114518.306221.5495Neighbours21BLASTN4259670.gbk
204834000*485627822279Island text1.6304819.838323.925Neighbours21BLASTN+4834000.gbk