Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014933: Bacteroides helcogenes P 36-108 chromosome, complete genome

NCBI: NC_014933

Host Lineage: Bacteroides helcogenes; Bacteroides; Bacteroidaceae; Bacteroidales; Bacteroidetes; Bacteria

General Information: Environment: Host; Isolation: Pig faeces; Temp: Mesophile. This group of microbes constitute the most abundant members of the intestinal microflora of mammals. Typically they are symbionts, but they can become opportunistic pathogens in the peritoneal (intra-abdominal) cavity. This organism produces many extracellular enzymes which assist in the breakdown of complex plant polysaccharides such as cellulose and hemicellulose and host-derived polysaccharides such as mucopolysaccharides. This species has been isolated from abscesses in pigs.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1220146*25816638021Island text1.6639440.122233.747Neighbours327BLASTN+IslandViewer 220146.gbk
2270000*29306523066Island text1.5413235.21447.6794Neighbours21BLASTN+270000.gbk
331825534288624632Island text1.709238.111532.2025Neighbours34BLASTN318255.gbk
4364463*38726722805Island text1.5329336.22924.3999Neighbours327BLASTNIslandViewer 364463.gbk
5510164*59333883175Island text1.762838.75447.2633Neighbours327BLASTNIslandViewer 510164.gbk
6602312*62225119940Island text1.4968135.603135.7291Neighbours331BLASTN602312.gbk
778545780840022944Island text1.5538437.858241.1778Neighbours331BLASTN785457.gbk
881496483469719734Island text2.171645.063255.3996Neighbours331BLASTN814964.gbk
990189792831226416Island text1.8722538.352553.3044Neighbours34BLASTNIslandViewer 901897.gbk
10979063*100456125499Island text1.9547140.517630.1472Neighbours34BLASTN+IslandViewer 979063.gbk
111023486*104541021925Island text1.6383536.282651.0339Neighbours331BLASTN+1023486.gbk
121081844110182919986Island text2.2478242.746854.372Neighbours34BLASTNIslandViewer 1081844.gbk
131431012145409923088Island text1.6190534.303653.7278Neighbours34BLASTN+1431012.gbk
141759729178509925371Island text1.6613335.724349.1508Neighbours34BLASTN1759729.gbk
152195683*221759921917Island text1.538536.107139.7376Neighbours34BLASTN+2195683.gbk
162240000*226386823869Island text1.6789735.21754.9915Neighbours21BLASTN2240000.gbk
172397518242074523228Island text1.5546939.913744.0675Neighbours34BLASTN2397518.gbk
182525393254661721225Island text1.7932336.971951.7985Neighbours331BLASTN+2525393.gbk
192555210257941424205Island text1.6873837.513847.4877Neighbours331BLASTN2555210.gbk
203015678303816422487Island text2.0181538.524457.105Neighbours34BLASTN+3015678.gbk
213251000327098419985Island text2.0647441.749848.9016Neighbours331BLASTNIslandViewer 3251000.gbk
223637172366101023839Island text1.7928235.083343.4706Neighbours34BLASTN3637172.gbk
233688000371046422465Island text1.3726136.928552.7774Neighbours34BLASTN3688000.gbk
243715467*373786022394Island text1.5457438.748735.2721Neighbours34BLASTN3715467.gbk
253755000*377330018301Island text1.640736.255753.482Neighbours34BLASTN3755000.gbk
263791840381416222323Island text1.8169239.740454.6504Neighbours331BLASTN+3791840.gbk
273856561388360227042Island text1.8950939.000534.6305Neighbours331BLASTN3856561.gbk
283942156397076528610Island text2.0124241.381134.6551Neighbours34BLASTN3942156.gbk