Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_014932: Bartonella clarridgeiae 73, complete genome

NCBI: NC_014932

Host Lineage: Bartonella clarridgeiae; Bartonella; Bartonellaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Bartonella clarridgeiae was first identified from a case of cat scratch fever in a veterinarian who had been bitten by a cat. This organism has subsequently been identified in both cats and dogs. Cats, which are infected by fleas carrying the bacteria, in turn infect humans when scratching or biting them, hence the name. A small red bump forms at the site of infection, followed 2-3 weeks later by a painful swelling of the lymph node. In immunocompromized patients, more severe progress may be observed, including encephalitis, swelling of the spleen, and heart valve infection. Approximately 24 000 cases are reported in the US each year.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1985882*103391148030Island text1.6580322.413540.975Neighbours21BLASTN+985882.gbk
21084422110853724116Island text1.6993821.521738.1693Neighbours21BLASTN1084422.gbk
31232346*130968277337Island text2.1405829.288641.2824Neighbours21BLASTN1232346.gbk
41314881*135142036540Island text1.7190528.826439.7608Neighbours21BLASTN+1314881.gbk
51387818*140981421997Island text1.5996221.396440.2165Neighbours21BLASTN1387818.gbk