Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014926: Thermovibrio ammonificans HB-1 chromosome, complete genome

NCBI: NC_014926

Host Lineage: Thermovibrio ammonificans; Thermovibrio; Desulfurobacteriaceae; Desulfurobacteriales; Aquificae; Bacteria

General Information: Environment: Deep sea, Fresh water, Hydrothermal vent; Isolation: Walls of an active deep-sea hydrothermal; Temp: Thermophile; Temp: 60 - 80C; Country: Pacific Ocean. This is a thermophilic, anaerobic, chemolithoautotrophic bacterium isolated from the walls of an active deep-sea hydrothermal vent chimney on the East Pacific Rise. This organism grows on mineral salts in the presence of carbon dioxide and hydrogen, reducing nitrate or sulfur to ammonium or hydrogen sulfide, respectively.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
166523061823967Island text1.6545133.299526.8102Neighbours348BLASTN+IslandViewer 6652.gbk
2165312*19272927418Island text2.5094935.731239.5831Neighbours348BLASTN+IslandViewer 165312.gbk
3295988*32694930962Island text3.1754240.115120.5209Neighbours348BLASTN+IslandViewer 295988.gbk
4608894*63891230019Island text3.4949340.906536.7685Neighbours348BLASTNIslandViewer 608894.gbk
579554981509919551Island text1.6669629.862351.4816Neighbours348BLASTN795549.gbk
681916384729428132Island text2.3669631.786941.7611Neighbours348+819163.gbk
787594890257426627Island text2.4996631.940637.4593Neighbours348BLASTNIslandViewer 875948.gbk
81108811*113361124801Island text1.5818226.732751.3034Neighbours348BLASTN+1108811.gbk
91381152*141251931368Island text2.5048639.387121.7583Neighbours348BLASTN+IslandViewer 1381152.gbk
101483974*150895024977Island text1.8385130.984839.0955Neighbours348BLASTN+IslandViewer 1483974.gbk