Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_014925: Staphylococcus pseudintermedius HKU10-03 chromosome, complete

NCBI: NC_014925

Host Lineage: Staphylococcus pseudintermedius; Staphylococcus; Staphylococcaceae; Bacillales; Firmicutes; Bacteria

General Information: Staphylococcus pseudintermedius HKU10-03 was cultured from the skin swab of a dog suffering from canine pyoderma. Staphylococcus pseudintermedius is a major veterinary pathogen and is the most important cause of pyoderma in dogs and other animals. It was previously confused with the closely related species Staphylococcus intermedius.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
157875960460625848Island text2.1865723.315839.8765Neighbours21BLASTN+IslandViewer 578759.gbk
260784363040322561Island text1.6670321.938834.718Neighbours21BLASTN+607843.gbk
31314570133846423895Island text1.6986323.343340.9246Neighbours21BLASTN+1314570.gbk
41970500*198985319354Island text1.5629424.332734.9708Neighbours21BLASTN+1970500.gbk