Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014924: Pseudoxanthomonas suwonensis 11-1 chromosome, complete genome

NCBI: NC_014924

Host Lineage: Pseudoxanthomonas suwonensis; Pseudoxanthomonas; Xanthomonadaceae; Xanthomonadales; Proteobacteria; Bacteria

General Information: Country: USA; Isolation: Bioreactor; Isolation: compost-feedstock enrichment culture. Aerobic, non-spore-forming Gram-negative bacterium. Pseudoxanthomonas suwonensis was first isolated from cotton waste compost an may produce compounds of industrial importance.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
172538075060925230Island text2.0749117.254817.6706Neighbours11BLASTN+725380.gbk
2936158*96352527368Island text1.4152114.950121.4216Neighbours11BLASTN936158.gbk
31701952*172639224441Island text2.9981619.147518.7147Neighbours11BLASTN+IslandViewer 1701952.gbk
41762995178909926105Island text2.6246816.324416.6724Neighbours11BLASTN1762995.gbk
52108116214188933774Island text3.4452925.389129.2977Neighbours11BLASTN+IslandViewer 2108116.gbk
62399524*243305533532Island text3.0153621.398921.0167Neighbours11BLASTN+2399524.gbk
72517068254012823061Island text1.6077417.01126.26751Neighbours11BLASTN+2517068.gbk
82840310*286007019761Island text1.5524315.31498.75563Neighbours11BLASTN+2840310.gbk
92961970298516923200Island text2.1390518.137815.7246Neighbours11BLASTN+2961970.gbk
103065430309278427355Island text2.8374820.718919.7167Neighbours11BLASTN+IslandViewer 3065430.gbk
113270547329089620350Island text1.9424116.034813.3451Neighbours11BLASTN+3270547.gbk
123334386336113526750Island text1.6575414.996819.2265Neighbours11BLASTN+3334386.gbk