Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014923: Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, complete

NCBI: NC_014923

Host Lineage: Mesorhizobium ciceri; Mesorhizobium; Phyllobacteriaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Country: Italy; Environment: Host, Rhizosphere, Root nodule, Soil; Isolation: 5 km before Bottida, Sardinia; Temp: Mesophile. Mesorhizobium species are fast-growing rhizobia. Strains generally form nitrogen-fixing nodules on the roots of a restricted range of leguminous plants. Mesorhizobium ciceri nodulates chickpeas.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
179370*9957220203Island text1.567722.740415.3409Neighbours11BLASTN+IslandViewer 79370.gbk
21249267*127291123645Island text1.3899221.479825.8923Neighbours11BLASTNIslandViewer 1249267.gbk
31680095*171239832304Island text2.5081228.110837.582Neighbours11BLASTN+1680095.gbk
42439197*246272623530Island text1.7347224.750224.8641Neighbours11BLASTN+IslandViewer 2439197.gbk
52672000269164419645Island text1.5670625.516826.5105Neighbours11BLASTN+IslandViewer 2672000.gbk
62888723290909920377Island text1.6753827.06124.5838Neighbours11BLASTNIslandViewer 2888723.gbk
73930669*395491524247Island text1.3885621.929716.2078Neighbours11BLASTNIslandViewer 3930669.gbk
83968000*399264624647Island text1.4878921.507329.7243Neighbours11BLASTN+IslandViewer 3968000.gbk
94017575*403885221278Island text1.695321.111622.8077Neighbours11BLASTN+IslandViewer 4017575.gbk
105666619569609929481Island text1.475422.495129.3519Neighbours11BLASTNIslandViewer 5666619.gbk
115721686574613024445Island text1.6267329.231515.0039Neighbours11BLASTNIslandViewer 5721686.gbk
125765660578509919440Island text1.4969320.27820.0045Neighbours11BLASTNIslandViewer 5765660.gbk
135787493*583009942607Island text1.714424.964921.0931Neighbours11BLASTN+IslandViewer 5787493.gbk
145868000589378125782Island text1.6308123.932224.1237Neighbours11BLASTN+IslandViewer 5868000.gbk
155909000593359924600Island text1.7592120.355523.298Neighbours11BLASTN+IslandViewer 5909000.gbk
165940500596642625927Island text1.5268423.70524.2166Neighbours11BLASTN+IslandViewer 5940500.gbk
175970182600283732656Island text1.5097421.043615.984Neighbours11BLASTN+IslandViewer 5970182.gbk
186060859607977518917Island text1.5079819.763321.0968Neighbours11BLASTN+IslandViewer 6060859.gbk