Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014915: Geobacillus sp. Y412MC52 chromosome, complete genome

NCBI: NC_014915

Host Lineage: Geobacillus; Geobacillus; Bacillaceae; Bacillales; Firmicutes; Bacteria

General Information: Country: USA; Environment: Fresh water, Hot spring; Isolation: Obsidian Hot Spring in Yellowstone National Park; Temp: Thermophile. Geobacillus species are chemo-organotrophic, obligately thermophilic, neutrophilic, motile, spore-forming, aerobic or facultatively anaerobic.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1308056*33162523570Island text1.6884930.341426.9728Neighbours31BLASTN+IslandViewer 308056.gbk
233278435979527012Island text1.5140335.347838.0192Neighbours31BLASTN332784.gbk
359556962289827330Island text3.0868141.022115.9815Neighbours31BLASTN+IslandViewer 595569.gbk
4727631*74702919399Island text1.6491627.456228.8768Neighbours31BLASTN+727631.gbk
51080793110381723025Island text1.8435334.796331.6202Neighbours31BLASTN+IslandViewer 1080793.gbk
61331459*135560624148Island text1.6621229.319730.5457Neighbours31BLASTN+IslandViewer 1331459.gbk
71376035140451428480Island text1.8289833.945139.4578Neighbours31BLASTNIslandViewer 1376035.gbk
81880748190032919582Island text1.5056530.939944.6888Neighbours31BLASTN+IslandViewer 1880748.gbk
91909275195426644992Island text1.806436.059532.089Neighbours31BLASTN+IslandViewer 1909275.gbk
102092678214415851481Island text1.8979533.716128.9935Neighbours31BLASTN+IslandViewer 2092678.gbk
112149884*217266822785Island text1.4394729.608522.1221Neighbours11BLASTN+2149884.gbk
122387639241026922631Island text1.522932.92839.6942Neighbours31BLASTN+IslandViewer 2387639.gbk
132427000246118334184Island text2.0798238.080532.326Neighbours31BLASTN+IslandViewer 2427000.gbk
142847680287220524526Island text1.8850233.734629.4483Neighbours11BLASTNIslandViewer 2847680.gbk
152900209292454124333Island text1.6948734.612121.1841Neighbours31BLASTN+2900209.gbk
162963500301079247293Island text2.1710736.333638.8064Neighbours31BLASTN+IslandViewer 2963500.gbk
173039639*305859918961Island text1.5350628.347928.1003NeighboursBLASTN+IslandViewer 3039639.gbk
183207300*323063123332Island text1.4740937.42721.8114Neighbours31BLASTN+IslandViewer 3207300.gbk
193259440328727327834Island text2.0086336.356131.2004Neighbours31BLASTNIslandViewer 3259440.gbk
203320768336792347156Island text1.7836834.541433.0557Neighbours11BLASTN+IslandViewer 3320768.gbk