Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_014914: Taylorella equigenitalis MCE9 chromosome, complete genome

NCBI: NC_014914

Host Lineage: Taylorella equigenitalis; Taylorella; Alcaligenaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: This strain was isolated in 2005 from the urethral fossa of a 4-year-old stallion from a stud farm in the Haute-Savoie, France. This species is a microaerophilic Gram-negative coccobacillus, classified in the Alcaligenaceae family. It is the causative agent of the contagious equine metritis (CEM), a sexually-transmitted infection of horses first reported in 1977, and actually detected in many countries and in various breeds of horses. CEM is characterized in infected mares by abundant mucopurulent vaginal discharge and a variable degree of vaginitis, endometritis and cervicitis that usually result in temporary infertility, whereas no clinical signs have been observed in stallions.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1127873*14950921637Island text2.0071820.064434.8398Neighbours21127873.gbk
2439285*46746428180Island text1.569223.134.2865Neighbours21BLASTN+439285.gbk
31092546111220919664Island text1.6412821.335542.0695Neighbours21BLASTN1092546.gbk
41327245135092223678Island text1.5580522.677540.1876Neighbours21BLASTN+1327245.gbk
51678973170799929027Island text1.6994624.243638.8389Neighbours21BLASTN1678973.gbk