Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014910: Alicycliphilus denitrificans BC chromosome, complete genome

NCBI: NC_014910

Host Lineage: Alicycliphilus denitrificans; Alicycliphilus; Comamonadaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Temp: Mesophile. Alicycliphilus denitrificans is a Gram-negative bacterium and is able to degrade cyclohexanol and other alicyclic compounds under denitrifying conditions. Isolated from a mixture of wastewater treatment plant material and benzene-polluted soil



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
124284528559942755Island text1.6970719.405218.0405Neighbours11BLASTN+IslandViewer 242845.gbk
2465980*50776541786Island text1.6093718.215321.2298Neighbours11BLASTN+IslandViewer 465980.gbk
375519280336548174Island text2.1784321.456326.6606Neighbours11BLASTN+IslandViewer 755192.gbk
4966761*99256725807Island text2.1937521.288321.4358Neighbours11BLASTN+IslandViewer 966761.gbk
51050706106920318498Island text1.704718.728722.049Neighbours11BLASTN+IslandViewer 1050706.gbk
61200605122046619862Island text1.5716820.285115.6749Neighbours11BLASTN+IslandViewer 1200605.gbk
71501952152412822177Island text1.9112817.983934.0175Neighbours11BLASTN+1501952.gbk
81591003*161459423592Island text1.8701618.275826.0324Neighbours11BLASTN+IslandViewer 1591003.gbk
91708045*173462726583Island text2.3404421.55532.4671Neighbours11BLASTN+IslandViewer 1708045.gbk
101734634175645321820Island text1.6355717.862418.2239Neighbours11BLASTN+1734634.gbk
111765065179274827684Island text2.6400321.606816.0616Neighbours11BLASTN+IslandViewer 1765065.gbk
121912552193924626695Island text1.6331419.991914.1844Neighbours11BLASTN+IslandViewer 1912552.gbk
132015627*203840722781Island text1.4336818.97525.6243Neighbours11BLASTN+2015627.gbk
142045088206811623029Island text2.779927.74319.7483Neighbours11BLASTNIslandViewer 2045088.gbk
152585747*260852622780Island text1.5379418.202823.2367Neighbours11BLASTN+2585747.gbk
162779573*280354723975Island text1.6051723.341919.8331Neighbours11BLASTN+IslandViewer 2779573.gbk
172930860295129320434Island text1.5120618.29415.5013Neighbours11BLASTN+2930860.gbk
183458475348275724283Island text1.6150718.330524.6498Neighbours11BLASTN3458475.gbk
193727887*376205634170Island text4.6470944.851424.7071Neighbours11BLASTN+IslandViewer 3727887.gbk
204026613*405112124509Island text1.8911920.663836.5144Neighbours11BLASTNIslandViewer 4026613.gbk
214207227422797420748Island text2.2014318.896916.4149Neighbours11BLASTN+IslandViewer 4207227.gbk
224316706*434127124566Island text2.5909823.042317.121Neighbours11BLASTN+IslandViewer 4316706.gbk