Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_014909: Candidatus Blochmannia vafer str. BVAF chromosome, complete genome

NCBI: NC_014909

Host Lineage: Blochmannia vafer; Blochmannia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Candidatus Blochmannia is an obligate bacterial associate of Camponotus and related ant genera. Blochmannia vafer was isolated from Camponotus vafer workers and larvae collected from a single colony in the Coronado National Forest near Portal, Arizona, USA. Blochmannia is located within bacteriocytes, where the bacterial cells float freely in the host cytoplasm, and within oocytes of queens.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
186000*12150135502Island text1.8270716.306332.5503Neighbours21BLASTN86000.gbk
2121771*14449822728Island text1.6175616.141829.9976Neighbours21BLASTN121771.gbk
3219498*24042420927Island text1.8303214.802331.069Neighbours21BLASTN219498.gbk
4540000*56451024511Island text2.9245216.196533.1203Neighbours21BLASTN540000.gbk
5589677*60884919173Island text2.9818814.375632.7506Neighbours21BLASTN589677.gbk
6619407*65312133715Island text3.9008718.130332.6037Neighbours21BLASTN619407.gbk
7662500*68970227203Island text3.4544617.204933.9049Neighbours21BLASTN662500.gbk