Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014844: Desulfovibrio aespoeensis Aspo-2 chromosome, complete genome

NCBI: NC_014844

Host Lineage: Desulfovibrio aespoeensis; Desulfovibrio; Desulfovibrionaceae; Desulfovibrionales; Proteobacteria; Bacteria

General Information: Country: Sweden; Environment: Animal intestinal microflora, Fresh water; Isolation: Granitic rock aquifer at 600 m depth; Temp: Mesophile; Temp: 30C. Desulfovibrio aespoeensis Aspo-2 is a halotolerant, sulfate-reducing Gram-negative bacterium isolated from granitic groundwater sampled at a depth of 600 m at Aspo hard rock laboratory, Sweden.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
19214811046018313Island text1.8424126.228136.4052Neighbours11BLASTN92148.gbk
2442380*48618443805Island text3.169839.235830.3103Neighbours33BLASTN+IslandViewer 442380.gbk
351155253463823087Island text2.0866226.486535.9118Neighbours11BLASTN+IslandViewer 511552.gbk
4659829*70618546357Island text2.462328.588632.4859Neighbours11BLASTN+659829.gbk
576279478749624703Island text2.3193732.425129.3251Neighbours11BLASTN+762794.gbk
6903877*92643122555Island text1.520127.06125.6365Neighbours11BLASTN+IslandViewer 903877.gbk
71270618*132486354246Island text2.0359433.121229.503Neighbours11BLASTN+1270618.gbk
81634985*166007225088Island text1.7431430.623833.3996Neighbours11BLASTN+IslandViewer 1634985.gbk
91773424*180207128648Island text3.2369845.718726.4812Neighbours11BLASTN+IslandViewer 1773424.gbk
101818939184739528457Island text2.3921736.861221.7964Neighbours11BLASTNIslandViewer 1818939.gbk
112028666*205226323598Island text3.7050733.87739.4484Neighbours11BLASTN2028666.gbk
122056943*208072223780Island text1.6946726.523239.6538Neighbours11BLASTN+IslandViewer 2056943.gbk
132158318217659218275Island text1.7727927.735939.9013Neighbours11BLASTN+2158318.gbk
142638994265855019557Island text1.7998226.554929.3661Neighbours11BLASTN+2638994.gbk
152721746277909957354Island text3.2542337.77929.5278Neighbours11BLASTN+IslandViewer 2721746.gbk
162828370*285320224833Island text1.9624732.185123.0077Neighbours11BLASTN+2828370.gbk
173015738*303709921362Island text2.0334730.083426.4814Neighbours11BLASTN+IslandViewer 3015738.gbk
183469848*349727027423Island text2.7161238.433627.8084Neighbours11BLASTN+IslandViewer 3469848.gbk
193538432*355761319182Island text1.8166326.104518.6564Neighbours11BLASTN+3538432.gbk
203582677360568023004Island text1.9923831.370419.6133Neighbours11BLASTN+3582677.gbk