Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014839: Pantoea sp. At-9b plasmid pPAT9B02, complete sequence

NCBI: NC_014839

Host Lineage: Pantoea; Pantoea; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Environment: Host; Temp: Mesophile. Pantoea sp. (strain At-9b) is a cellulose-degrading Gram-negative bacterium isolated from the fungus gardens of Atta cephalotes leaf-cutter ants. Pantoea sp. has the capacity to degrade cellulose, and thus may play a role as cellulose-degrading symbionts in the gardens of leaf-cutter ants.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1125193559923081Island text3.0272743.209932.2794Neighbours41BLASTN+12519.gbk
2683089375025443Island text2.9510443.478825.2482Neighbours41BLASTN+68308.gbk
317000019275922760Island text2.2131640.442635.8083Neighbours41BLASTN170000.gbk
4253961*31222658266Island text4.3892846.385425.1221Neighbours41BLASTN+253961.gbk