Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_014838: Pantoea sp. At-9b plasmid pPAT9B01, complete sequence

NCBI: NC_014838

Host Lineage: Pantoea; Pantoea; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Environment: Host; Temp: Mesophile. Pantoea sp. (strain At-9b) is a cellulose-degrading Gram-negative bacterium isolated from the fungus gardens of Atta cephalotes leaf-cutter ants. Pantoea sp. has the capacity to degrade cellulose, and thus may play a role as cellulose-degrading symbionts in the gardens of leaf-cutter ants.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
117593920509029152Island text3.1193740.890221.3598Neighbours41BLASTN+175939.gbk
221800024009922100Island text1.479936.247632.1294Neighbours41BLASTN+218000.gbk
325432227999125670Island text2.4509538.628222.3737Neighbours41BLASTN+254322.gbk
458958161723827658Island text2.1811934.664223.7348Neighbours41BLASTN+589581.gbk