Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014837: Pantoea sp. At-9b chromosome, complete genome

NCBI: NC_014837

Host Lineage: Pantoea; Pantoea; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Environment: Host; Temp: Mesophile. Pantoea sp. (strain At-9b) is a cellulose-degrading Gram-negative bacterium isolated from the fungus gardens of Atta cephalotes leaf-cutter ants. Pantoea sp. has the capacity to degrade cellulose, and thus may play a role as cellulose-degrading symbionts in the gardens of leaf-cutter ants.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
133014*6044127428Island text3.0220343.532118.1377Neighbours41BLASTN+IslandViewer 33014.gbk
238786841433626469Island text1.8975734.494222.8631Neighbours41BLASTNIslandViewer 387868.gbk
380991183566025750Island text1.7996432.115421.7759Neighbours41BLASTN809911.gbk
41144500*117382529326Island text2.1411238.01726.0403Neighbours41BLASTN+IslandViewer 1144500.gbk
51570500*160135230853Island text2.520442.527733.9228Neighbours41BLASTN+IslandViewer 1570500.gbk
61873020*190870735688Island text1.9420434.163730.4733Neighbours41BLASTN+IslandViewer 1873020.gbk
72354241238131727077Island text1.7481433.042425.9475Neighbours41BLASTN+IslandViewer 2354241.gbk
82458780*248745128672Island text2.2403836.022326.2137NeighboursBLASTN+IslandViewer 2458780.gbk
92586870261129224423Island text1.4675630.131320.8856Neighbours41BLASTN2586870.gbk
102709813*273364723835Island text1.6024231.164936.0702Neighbours41BLASTN+2709813.gbk
112758239*277859920361Island text1.5859228.436124.6589Neighbours41BLASTN+IslandViewer 2758239.gbk
122803447*283151828072Island text1.9108435.535423.6839Neighbours41BLASTN+2803447.gbk
133126543315305826516Island text1.8065730.721135.7516Neighbours41BLASTN+IslandViewer 3126543.gbk
143633378*366348330106Island text3.0021238.371417.5973Neighbours41BLASTNIslandViewer 3633378.gbk
153739408*376471125304Island text1.561831.626932.8664Neighbours41BLASTN+3739408.gbk
163766426379523728812Island text1.9081736.19629.0094Neighbours41BLASTN+IslandViewer 3766426.gbk