Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014836: Desulfurispirillum indicum S5 chromosome, complete genome

NCBI: NC_014836

Host Lineage: Desulfurispirillum indicum; Desulfurispirillum; Chrysiogenaceae; Chrysiogenales; Chrysiogenetes; Bacteria

General Information: Environment: Fresh water; Temp: Mesophile. This is the first cultured species of the proposed new genus "Desulfurispirillum", and the sequencing of its genome will expand the range of experimental approaches that researchers can use to characterize its metabolic pathways for energy production and understand how these pathways are regulated. This organism is notable for its ability to reduce selenate to selenite and further to insoluble elemental selenium, in a process called dissimilatory selenate reduction.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1332785876525488Island text1.4237529.900328.8464Neighbours11BLASTN+33278.gbk
2155924*17823722314Island text1.4836734.083244.774Neighbours11BLASTN+155924.gbk
322301326748344471Island text1.7240633.895635.0646Neighbours13BLASTN+IslandViewer 223013.gbk
4312353*33797825626Island text2.0739934.799345.34Neighbours14BLASTNIslandViewer 312353.gbk
5497350*52463527286Island text2.2554239.981728.4265Neighbours14BLASTN+IslandViewer 497350.gbk
6993448101605522608Island text1.5649334.140625.5993Neighbours13BLASTN+IslandViewer 993448.gbk
71052214*107658924376Island text1.6792432.345321.9363Neighbours13BLASTN1052214.gbk
81108919113277023852Island text1.4774535.943640.413BLASTN+1108919.gbk
91180454*120435023897Island text1.7594833.999448.5389Neighbours54BLASTN1180454.gbk
101551965158996538001Island text1.9750235.928439.7202Neighbours32BLASTN+1551965.gbk
111606587162498218396Island text1.5421829.085637.8913Neighbours13BLASTN+IslandViewer 1606587.gbk
122325559*234541319855Island text1.5251432.626140.4881Neighbours110BLASTN2325559.gbk
132527000254676519766Island text1.7526631.072249.5082Neighbours11BLASTN+2527000.gbk
142581939*260414922211Island text1.5935932.046430.5031Neighbours11BLASTN+2581939.gbk
152620871264366422794Island text1.9191535.318632.8109Neighbours33BLASTN+2620871.gbk
162723060274355820499Island text1.6062530.237852.8614Neighbours14BLASTNIslandViewer 2723060.gbk
172848000*287078522786Island text1.6057936.552232.3317Neighbours110BLASTN2848000.gbk
182919508294399924492Island text1.501629.997632.0197Neighbours11BLASTN+2919508.gbk