Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014834: Rhodopseudomonas palustris DX-1 chromosome, complete genome

NCBI: NC_014834

Host Lineage: Rhodopseudomonas palustris; Rhodopseudomonas; Bradyrhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Environment: Fresh water, Soil; Temp: Mesophile. This organism has a diverse metabolism and is capable of growth using light, inorganic, or organic compounds as energy sources and carbon dioxide or organic compounds as carbon sources. Commonly found in soil and water environments this bacterium is also capable of degrading a wide range of toxic organic compounds, and may be of use in bioremediation of polluted sites. The bacterium undergoes differentiation to produce a stalked nonmotile cell and a motile flagellated cell. In the presence of light, this bacterium produces a number of intracellular membranous vesicles to house the photosynthetic reaction centers.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
161489065620741318Island text1.7216323.404222.6304Neighbours11BLASTN+IslandViewer 614890.gbk
287292489472321800Island text1.6183323.093415.1529Neighbours11BLASTN+IslandViewer 872924.gbk
3959986*100409944114Island text1.6210224.389219.1192Neighbours11BLASTNIslandViewer 959986.gbk
42206119225990253784Island text2.1012124.865523.9379Neighbours11BLASTN+IslandViewer 2206119.gbk
52264108230297938872Island text2.1661127.681527.681Neighbours11BLASTN+IslandViewer 2264108.gbk
62641514266465223139Island text2.0770128.207226.0117Neighbours11BLASTN+2641514.gbk
73130715*319006159347Island text1.6229719.901123.2012Neighbours11BLASTN+IslandViewer 3130715.gbk
83472000350628234283Island text1.8853129.265127.4883Neighbours11BLASTN+IslandViewer 3472000.gbk
94644047466972225676Island text1.7065224.622623.3248Neighbours11BLASTNIslandViewer 4644047.gbk