Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014833: Ruminococcus albus 7 chromosome, complete genome

NCBI: NC_014833

Host Lineage: Ruminococcus albus; Ruminococcus; Ruminococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Environment: Host; Temp: Mesophile; Temp: 40C. The bacterium requires phenylacetic and phenylpropionic acids for maximal growth. The organism produces cellulosomes at the cell surface that are multimeric protein complexes that contain scaffolding proteins and degradative enzymes. Understanding the metabolism of plant polysaccharides may enable scientists to improve the productivity of ruminant organisms such as cattle



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
197931*11843720507Island text1.606931.584454.1682Neighbours345BLASTN97931.gbk
2406889*42546718579Island text1.5958333.873456.1457Neighbours345BLASTN406889.gbk
31045180*106769222513Island text1.5324330.281850.864Neighbours345BLASTN+1045180.gbk
41488994151139822405Island text1.8850536.244952.3287Neighbours345BLASTN+1488994.gbk
51539678*155896019283Island text1.9923831.653355.4351Neighbours345BLASTN+IslandViewer 1539678.gbk
62225233224810822876Island text1.4055230.398847.8012Neighbours345BLASTN+IslandViewer 2225233.gbk
72855543*287721521673Island text2.0605632.922948.8963Neighbours345BLASTN2855543.gbk
82988814*301054921736Island text1.5277329.389347.3543Neighbours345BLASTN+2988814.gbk
93161257*318382122565Island text1.5428331.75147.1397Neighbours3453161257.gbk
103268102*329097922878Island text1.6344232.483351.9108Neighbours345BLASTN3268102.gbk
113362500338448721988Island text1.5735837.953344.2522Neighbours345BLASTN+3362500.gbk
123444550*347132026771Island text1.6198434.727653.5418Neighbours345BLASTN3444550.gbk
133667748*368799920252Island text2.028333.652546.2884Neighbours21BLASTN+3667748.gbk